Gene Expression
Nebulas
Gene Expression Nebulas| Download | Dataset ID | BioProject ID | Project ID | Dataset Name | Species | Strategy | Sample Number | Tissue | Cell Type | Cell Line | Healthy Condition | Development Stage | Case Detail | Control Detail | Cell Number | Biological Condition | Quality and Quantity | |||||||||
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| Baseline | Genetic | Phenotypic | Environmental | Spatial | Temporal | RNA Type | Median Mapping Quality | Median Coverage | Max Sequencing Length | Max Replicate# | ||||||||||||||||
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Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions.
Li L, Dong J, Yan L, Yong J, Liu X, Hu Y, Fan X, Wu X, Guo H, Wang X, Zhu X, Li R, Yan J, Wei Y, Zhao Y, Wang W, Ren Y, Yuan P, Yan Z, Hu B, Guo F, Wen L, Tang F, Qiao J.
Cell Stem Cell. 2017-04-27; 20 (6)
PMID: 28457750 DOI: 10.1016/j.stem.2017.03.007
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Macosko EZ, Basu A, Satija R, Nemesh J, Shekhar K, Goldman M, Tirosh I, Bialas AR, Kamitaki N, Martersteck EM, Trombetta JJ, Weitz DA, Sanes JR, Shalek AK, Regev A, McCarroll SA.
Cell. 2015-05-01; 161 (5)
PMID: 26000488 DOI: 10.1016/j.cell.2015.05.002
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Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells.
Xie S, Duan J, Li B, Zhou P, Hon GC.
Mol Cell. 2017-04-13; 66 (2)
PMID: 28416141 DOI: 10.1016/j.molcel.2017.03.007
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Single-Cell RNA Sequencing of Tocilizumab-Treated Peripheral Blood Mononuclear Cells as an in vitro Model of Inflammation.
Zarinsefat A, Hartoularos G, Rychkov D, Rashmi P, Chandran S, Vincenti F, Yee CJ, Sarwal MM.
Front Genet. 2020-01-01; 11
PMID: 33469465 DOI: 10.3389/fgene.2020.610682
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Functional inflammatory profiles distinguish myelin-reactive T cells from patients with multiple sclerosis.
Cao Y, Goods BA, Raddassi K, Nepom GT, Kwok WW, Love JC, Hafler DA.
Sci Transl Med. 2015-05-01; 7 (287)
PMID: 25972006 DOI: 10.1126/scitranslmed.aaa8038
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Gene expression variability across cells and species shapes innate immunity.
Hagai T, Chen X, Miragaia RJ, Rostom R, Gomes T, Kunowska N, Henriksson J, Park JE, Proserpio V, Donati G, Bossini-Castillo L, Vieira Braga FA, Naamati G, Fletcher J, Stephenson E, Vegh P, Trynka G, Kondova I, Dennis M, Haniffa M, Nourmohammad A, Lässig M, Teichmann SA.
Nature. 2018-10-24; 563 (7730)
PMID: 30356220 DOI: 10.1038/s41586-018-0657-2
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Plasma extracellular vesicle long RNA profiling identifies a diagnostic signature for the detection of pancreatic ductal adenocarcinoma.
Yu S, Li Y, Liao Z, Wang Z, Wang Z, Li Y, Qian L, Zhao J, Zong H, Kang B, Zou WB, Chen K, He X, Meng Z, Chen Z, Huang S, Wang P.
Gut. 2019-09-27; 69 (3)
PMID: 31562239 DOI: 10.1136/gutjnl-2019-318860
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Activation of Interferon-Stimulated Transcriptomes and ACE2 Isoforms in Human Airway Epithelium Is Curbed by Janus Kinase Inhibitors.
Lee HK, Jung O, Hennighausen L.
Res Sq. 2020-12-11;
PMID: 33330857 DOI: 10.21203/rs.3.rs-119695/v1
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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM, Melton DA, Yanai I.
Cell Syst. 2016-09-22; 3 (4)
PMID: 27667365 DOI: 10.1016/j.cels.2016.08.011
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Chromatin state dynamics confers specific therapeutic strategies in enhancer subtypes of colorectal cancer.
Orouji E, Raman AT, Singh AK, Sorokin A, Arslan E, Ghosh AK, Schulz J, Terranova C, Jiang S, Tang M, Maitituoheti M, Callahan SC, Barrodia P, Tomczak K, Jiang Y, Jiang Z, Davis JS, Ghosh S, Lee HM, Reyes-Uribe L, Chang K, Liu Y, Chen H, Azhdarinia A, Morris J, Vilar E, Carmon KS, Kopetz SE, Rai K.
Gut. 2021-05-31; 71 (5)
PMID: 34059508 DOI: 10.1136/gutjnl-2020-322835
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Single-Cell Expression Variability Implies Cell Function.
Osorio D, Yu X, Zhong Y, Li G, Yu P, Serpedin E, Huang JZ, Cai JJ.
Cells. 2019-12-19; 9 (1)
PMID: 31861624 DOI: 10.3390/cells9010014
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Single cell transcriptome profiling of the human alcohol-dependent brain.
Brenner E, Tiwari GR, Kapoor M, Liu Y, Brock A, Mayfield RD.
Hum Mol Genet. 2020-05-01; 29 (7)
PMID: 32142123 DOI: 10.1093/hmg/ddaa038
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Deciphering the state of immune silence in fatal COVID-19 patients.
Bost P, De Sanctis F, Canè S, Ugel S, Donadello K, Castellucci M, Eyal D, Fiore A, Anselmi C, Barouni RM, Trovato R, Caligola S, Lamolinara A, Iezzi M, Facciotti F, Mazzariol A, Gibellini D, De Nardo P, Tacconelli E, Gottin L, Polati E, Schwikowski B, Amit I, Bronte V.
Nat Commun. 2021-03-05; 12 (1)
PMID: 33674591 DOI: 10.1038/s41467-021-21702-6
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The single-cell transcriptomic landscape of early human diabetic nephropathy.
Wilson PC, Wu H, Kirita Y, Uchimura K, Ledru N, Rennke HG, Welling PA, Waikar SS, Humphreys BD.
Proc Natl Acad Sci U S A. 2019-09-10; 116 (39)
PMID: 31506348 DOI: 10.1073/pnas.1908706116
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Clinico-histopathologic and single nuclei RNA sequencing insights into cardiac injury and microthrombi in critical COVID-19.
Brener MI, Hulke ML, Fukuma N, Golob S, Zilinyi RS, Zhou Z, Tzimas C, Russo I, McGroder C, Pfeiffer RD, Chong A, Zhang G, Burkhoff D, Leon MB, Maurer MS, Moses JW, Uhlemann AC, Hibshoosh H, Uriel N, Szabolcs MJ, Redfors B, Marboe CC, Baldwin MR, Tucker NR, Tsai EJ.
JCI Insight. 2021-12-14;
PMID: 34905515 DOI: 10.1172/jci.insight.154633
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Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease.
Bouquet J, Soloski MJ, Swei A, Cheadle C, Federman S, Billaud JN, Rebman AW, Kabre B, Halpert R, Boorgula M, Aucott JN, Chiu CY.
mBio. 2016-02-12; 7 (1)
PMID: 26873097 DOI: 10.1128/mbio.00100-16
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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.
Yan L, Yang M, Guo H, Yang L, Wu J, Li R, Liu P, Lian Y, Zheng X, Yan J, Huang J, Li M, Wu X, Wen L, Lao K, Li R, Qiao J, Tang F.
Nat Struct Mol Biol. 2013-08-11; 20 (9)
PMID: 23934149 DOI: 10.1038/nsmb.2660
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Postmortem high-dimensional immune profiling of severe COVID-19 patients reveals distinct patterns of immunosuppression and immunoactivation.
Wu H, He P, Ren Y, Xiao S, Wang W, Liu Z, Li H, Wang Z, Zhang D, Cai J, Zhou X, Jiang D, Fei X, Zhao L, Zhang H, Liu Z, Chen R, Li W, Wang C, Zhang S, Qin J, Nashan B, Sun C.
Nat Commun. 2022-01-12; 13 (1)
PMID: 35022412 DOI: 10.1038/s41467-021-27723-5
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A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis.
Yoo S, Wang W, Wang Q, Fiel MI, Lee E, Hiotis SP, Zhu J.
BMC Med. 2017-12-07; 15 (1)
PMID: 29212479 DOI: 10.1186/s12916-017-0973-7
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Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection.
Desai N, Neyaz A, Szabolcs A, Shih AR, Chen JH, Thapar V, Nieman LT, Solovyov A, Mehta A, Lieb DJ, Kulkarni AS, Jaicks C, Xu KH, Raabe MJ, Pinto CJ, Juric D, Chebib I, Colvin RB, Kim AY, Monroe R, Warren SE, Danaher P, Reeves JW, Gong J, Rueckert EH, Greenbaum BD, Hacohen N, Lagana SM, Rivera MN, Sholl LM, Stone JR, Ting DT, Deshpande V.
Nat Commun. 2020-12-09; 11 (1)
PMID: 33298930 DOI: 10.1038/s41467-020-20139-7
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Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis.
He H, Suryawanshi H, Morozov P, Gay-Mimbrera J, Del Duca E, Kim HJ, Kameyama N, Estrada Y, Der E, Krueger JG, Ruano J, Tuschl T, Guttman-Yassky E.
J Allergy Clin Immunol. 2020-02-07; 145 (6)
PMID: 32035984 DOI: 10.1016/j.jaci.2020.01.042
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Pain-Associated Transcriptome Changes in Synovium of Knee Osteoarthritis Patients.
Bratus-Neuenschwander A, Castro-Giner F, Frank-Bertoncelj M, Aluri S, Fucentese SF, Schlapbach R, Sprott H.
Genes (Basel). 2018-07-04; 9 (7)
PMID: 29973527 DOI: 10.3390/genes9070338
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SARS-CoV-2 infection induces beta cell transdifferentiation.
Tang X, Uhl S, Zhang T, Xue D, Li B, Vandana JJ, Acklin JA, Bonnycastle LL, Narisu N, Erdos MR, Bram Y, Chandar V, Chong ACN, Lacko LA, Min Z, Lim JK, Borczuk AC, Xiang J, Naji A, Collins FS, Evans T, Liu C, tenOever BR, Schwartz RE, Chen S.
Cell Metab. 2021-05-19; 33 (8)
PMID: 34081913 DOI: 10.1016/j.cmet.2021.05.015
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Human hepatic organoids for the analysis of human genetic diseases.
Guan Y, Xu D, Garfin PM, Ehmer U, Hurwitz M, Enns G, Michie S, Wu M, Zheng M, Nishimura T, Sage J, Peltz G.
JCI Insight. 2017-09-07; 2 (17)
PMID: 28878125 DOI: 10.1172/jci.insight.94954
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Adult Stem Cell-derived Complete Lung Organoid Models Emulate Lung Disease in COVID-19.
Tindle C, Fuller M, Fonseca A, Taheri S, Ibeawuchi SR, Beutler N, Katkar G, Claire A, Castillo V, Hernandez M, Russo H, Duran J, Crotty Alexander LE, Tipps A, Lin G, Thistlethwaite PA, Chattopadhyay R, Rogers TF, Sahoo D, Ghosh P, Das S.
bioRxiv. 2021-05-05;
PMID: 33106807 DOI: 10.1101/2020.10.17.344002
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Recurrently deregulated lncRNAs in hepatocellular carcinoma.
Yang Y, Chen L, Gu J, Zhang H, Yuan J, Lian Q, Lv G, Wang S, Wu Y, Yang YT, Wang D, Liu Y, Tang J, Luo G, Li Y, Hu L, Sun X, Wang D, Guo M, Xi Q, Xi J, Wang H, Zhang MQ, Lu ZJ.
Nat Commun. 2017-02-13; 8
PMID: 28194035 DOI: 10.1038/ncomms14421
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Genetic and transcriptional evolution alters cancer cell line drug response.
Ben-David U, Siranosian B, Ha G, Tang H, Oren Y, Hinohara K, Strathdee CA, Dempster J, Lyons NJ, Burns R, Nag A, Kugener G, Cimini B, Tsvetkov P, Maruvka YE, O'Rourke R, Garrity A, Tubelli AA, Bandopadhayay P, Tsherniak A, Vazquez F, Wong B, Birger C, Ghandi M, Thorner AR, Bittker JA, Meyerson M, Getz G, Beroukhim R, Golub TR.
Nature. 2018-08-08; 560 (7718)
PMID: 30089904 DOI: 10.1038/s41586-018-0409-3
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Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Xi Y, Kim T, Brumwell AN, Driver IH, Wei Y, Tan V, Jackson JR, Xu J, Lee DK, Gotts JE, Matthay MA, Shannon JM, Chapman HA, Vaughan AE.
Nat Cell Biol. 2017-07-24; 19 (8)
PMID: 28737769 DOI: 10.1038/ncb3580
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Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline.
Hennrich ML, Romanov N, Horn P, Jaeger S, Eckstein V, Steeples V, Ye F, Ding X, Poisa-Beiro L, Lai MC, Lang B, Boultwood J, Luft T, Zaugg JB, Pellagatti A, Bork P, Aloy P, Gavin AC, Ho AD.
Nat Commun. 2018-10-01; 9 (1)
PMID: 30275468 DOI: 10.1038/s41467-018-06353-4
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The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty.
Guo J, Nie X, Giebler M, Mlcochova H, Wang Y, Grow EJ, DonorConnect, Kim R, Tharmalingam M, Matilionyte G, Lindskog C, Carrell DT, Mitchell RT, Goriely A, Hotaling JM, Cairns BR.
Cell Stem Cell. 2020-01-09; 26 (2)
PMID: 31928944 DOI: 10.1016/j.stem.2019.12.005
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IL-21 drives expansion and plasma cell differentiation of autoreactive CD11chiT-bet+ B cells in SLE.
Wang S, Wang J, Kumar V, Karnell JL, Naiman B, Gross PS, Rahman S, Zerrouki K, Hanna R, Morehouse C, Holoweckyj N, Liu H, Autoimmunity Molecular Medicine Team, Manna Z, Goldbach-Mansky R, Hasni S, Siegel R, Sanjuan M, Streicher K, Cancro MP, Kolbeck R, Ettinger R.
Nat Commun. 2018-05-01; 9 (1)
PMID: 29717110 DOI: 10.1038/s41467-018-03750-7
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RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics.
Best MG, Sol N, Kooi I, Tannous J, Westerman BA, Rustenburg F, Schellen P, Verschueren H, Post E, Koster J, Ylstra B, Ameziane N, Dorsman J, Smit EF, Verheul HM, Noske DP, Reijneveld JC, Nilsson RJA, Tannous BA, Wesseling P, Wesseling P, Wurdinger T.
Cancer Cell. 2015-10-29; 28 (5)
PMID: 26525104 DOI: 10.1016/j.ccell.2015.09.018
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Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.
Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW.
Mol Cell. 2017-06-29; 67 (1)
PMID: 28673540 DOI: 10.1016/j.molcel.2017.06.003
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Severe COVID-19 Is Characterized by an Impaired Type I Interferon Response and Elevated Levels of Arginase Producing Granulocytic Myeloid Derived Suppressor Cells.
Dean MJ, Ochoa JB, Sanchez-Pino MD, Zabaleta J, Garai J, Del Valle L, Wyczechowska D, Baiamonte LB, Philbrook P, Majumder R, Vander Heide RS, Dunkenberger L, Thylur RP, Nossaman B, Roberts WM, Chapple AG, Wu J, Hicks C, Collins J, Luke B, Johnson R, Koul HK, Rees CA, Morris CR, Garcia-Diaz J, Ochoa AC.
Front Immunol. 2021-07-14; 12
PMID: 34341659 DOI: 10.3389/fimmu.2021.695972
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Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in human primary prostate cells in monolayer and organoid culture conditions.
McCray T, Moline D, Baumann B, Vander Griend DJ, Nonn L.
Am J Clin Exp Urol. 2019-06-15; 7 (3)
PMID: 31317052 DOI:
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Maturation signatures of conventional dendritic cell subtypes in COVID-19 suggest direct viral sensing.
Marongiu L, Protti G, Facchini FA, Valache M, Mingozzi F, Ranzani V, Putignano AR, Salviati L, Bevilacqua V, Curti S, Crosti M, Sarnicola ML, D'Angiò M, Bettini LR, Biondi A, Nespoli L, Tamini N, Clementi N, Mancini N, Abrignani S, Spreafico R, Granucci F.
Eur J Immunol. 2021-10-01; 52 (1)
PMID: 34333764 DOI: 10.1002/eji.202149298
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SARS-CoV-2 infection and replication in human gastric organoids.
Giobbe GG, Bonfante F, Jones BC, Gagliano O, Luni C, Zambaiti E, Perin S, Laterza C, Busslinger G, Stuart H, Pagliari M, Bortolami A, Mazzetto E, Manfredi A, Colantuono C, Di Filippo L, Pellegata AF, Panzarin V, Thapar N, Li VSW, Eaton S, Cacchiarelli D, Clevers H, Elvassore N, De Coppi P.
Nat Commun. 2021-11-16; 12 (1)
PMID: 34785679 DOI: 10.1038/s41467-021-26762-2
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Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer.
Cillo AR, Kürten CHL, Tabib T, Qi Z, Onkar S, Wang T, Liu A, Duvvuri U, Kim S, Soose RJ, Oesterreich S, Chen W, Lafyatis R, Bruno TC, Ferris RL, Vignali DAA.
Immunity. 2020-01-07; 52 (1)
PMID: 31924475 DOI: 10.1016/j.immuni.2019.11.014
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Aryl Hydrocarbon Receptor Controls Monocyte Differentiation into Dendritic Cells versus Macrophages.
Goudot C, Coillard A, Villani AC, Gueguen P, Cros A, Sarkizova S, Tang-Huau TL, Bohec M, Baulande S, Hacohen N, Amigorena S, Segura E.
Immunity. 2017-09-01; 47 (3)
PMID: 28930664 DOI: 10.1016/j.immuni.2017.08.016
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Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of human immune cells.
Bossel Ben-Moshe N, Hen-Avivi S, Levitin N, Yehezkel D, Oosting M, Joosten LAB, Netea MG, Avraham R.
Nat Commun. 2019-07-22; 10 (1)
PMID: 31332193 DOI: 10.1038/s41467-019-11257-y
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Global absence and targeting of protective immune states in severe COVID-19.
Combes AJ, Courau T, Kuhn NF, Hu KH, Ray A, Chen WS, Chew NW, Cleary SJ, Kushnoor D, Reeder GC, Shen A, Tsui J, Hiam-Galvez KJ, Muñoz-Sandoval P, Zhu WS, Lee DS, Sun Y, You R, Magnen M, Rodriguez L, Im KW, Serwas NK, Leligdowicz A, Zamecnik CR, Loudermilk RP, Wilson MR, Ye CJ, Fragiadakis GK, Looney MR, Chan V, Ward A, Carrillo S, UCSF COMET Consortium, Matthay M, Erle DJ, Woodruff PG, Langelier C, Kangelaris K, Hendrickson CM, Calfee C, Rao AA, Krummel MF.
Nature. 2021-01-25; 591 (7848)
PMID: 33494096 DOI: 10.1038/s41586-021-03234-7
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Single-Cell Transcriptomic Profiling of Pluripotent Stem Cell-Derived SCGB3A2+ Airway Epithelium.
McCauley KB, Alysandratos KD, Jacob A, Hawkins F, Caballero IS, Vedaie M, Yang W, Slovik KJ, Morley M, Carraro G, Kook S, Guttentag SH, Stripp BR, Morrisey EE, Kotton DN.
Stem Cell Reports. 2018-04-12; 10 (5)
PMID: 29657097 DOI: 10.1016/j.stemcr.2018.03.013
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Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta.
Liu Y, Fan X, Wang R, Lu X, Dang YL, Wang H, Lin HY, Zhu C, Ge H, Cross JC, Wang H.
Cell Res. 2018-07-24; 28 (8)
PMID: 30042384 DOI: 10.1038/s41422-018-0066-y
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Virus-induced senescence is a driver and therapeutic target in COVID-19.
Lee S, Yu Y, Trimpert J, Benthani F, Mairhofer M, Richter-Pechanska P, Wyler E, Belenki D, Kaltenbrunner S, Pammer M, Kausche L, Firsching TC, Dietert K, Schotsaert M, Martínez-Romero C, Singh G, Kunz S, Niemeyer D, Ghanem R, Salzer HJF, Paar C, Mülleder M, Uccellini M, Michaelis EG, Khan A, Lau A, Schönlein M, Habringer A, Tomasits J, Adler JM, Kimeswenger S, Gruber AD, Hoetzenecker W, Steinkellner H, Purfürst B, Motz R, Di Pierro F, Lamprecht B, Osterrieder N, Landthaler M, Drosten C, García-Sastre A, Langer R, Ralser M, Eils R, Reimann M, Fan DNY, Schmitt CA.
Nature. 2021-09-13;
PMID: 34517409 DOI: 10.1038/s41586-021-03995-1
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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL.
Nat Biotechnol. 2014-03-23; 32 (4)
PMID: 24658644 DOI: 10.1038/nbt.2859
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Multi-omic profiling of peritoneal metastases in gastric cancer identifies molecular subtypes and therapeutic vulnerabilities.
Tanaka Y, Chiwaki F, Kojima S, Kawazu M, Komatsu M, Ueno T, Inoue S, Sekine S, Matsusaki K, Matsushita H, Boku N, Kanai Y, Yatabe Y, Sasaki H, Mano H.
Nat Cancer. 2021-08-16; 2 (9)
PMID: 35121863 DOI: 10.1038/s43018-021-00240-6
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Single-Cell RNA Sequencing of Urinary Cells Reveals Distinct Cellular Diversity in COVID-19-Associated AKI.
Cheung MD, Erman EN, Liu S, Erdmann NB, Ghajar-Rahimi G, Moore KH, Edberg JC, George JF, Agarwal A.
Kidney360. 2021-11-05; 3 (1)
PMID: 35368565 DOI: 10.34067/kid.0005522021
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Detection of SARS-CoV-2 genome and whole transcriptome sequencing in frontal cortex of COVID-19 patients.
Gagliardi S, Poloni ET, Pandini C, Garofalo M, Dragoni F, Medici V, Davin A, Visonà SD, Moretti M, Sproviero D, Pansarasa O, Guaita A, Ceroni M, Tronconi L, Cereda C.
Brain Behav Immun. 2021-05-19; 97
PMID: 34022369 DOI: 10.1016/j.bbi.2021.05.012
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Deletion of the Polycomb-Group Protein EZH2 Leads to Compromised Self-Renewal and Differentiation Defects in Human Embryonic Stem Cells.
Collinson A, Collier AJ, Morgan NP, Sienerth AR, Chandra T, Andrews S, Rugg-Gunn PJ.
Cell Rep. 2016-12-01; 17 (10)
PMID: 27926872 DOI: 10.1016/j.celrep.2016.11.032
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Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men.
Samuel RM, Majd H, Richter MN, Ghazizadeh Z, Zekavat SM, Navickas A, Ramirez JT, Asgharian H, Simoneau CR, Bonser LR, Koh KD, Garcia-Knight M, Tassetto M, Sunshine S, Farahvashi S, Kalantari A, Liu W, Andino R, Zhao H, Natarajan P, Erle DJ, Ott M, Goodarzi H, Fattahi F.
Cell Stem Cell. 2020-11-17; 27 (6)
PMID: 33232663 DOI: 10.1016/j.stem.2020.11.009
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Immune signatures underlying post-acute COVID-19 lung sequelae.
Cheon IS, Li C, Son YM, Goplen NP, Wu Y, Cassmann T, Wang Z, Wei X, Tang J, Li Y, Marlow H, Hughes S, Hammel L, Cox TM, Goddery E, Ayasoufi K, Weiskopf D, Boonyaratanakornkit J, Dong H, Li H, Chakraborty R, Johnson AJ, Edell E, Taylor JJ, Kaplan MH, Sette A, Bartholmai BJ, Kern R, Vassallo R, Sun J.
Sci Immunol. 2021-11-12; 6 (65)
PMID: 34591653 DOI: 10.1126/sciimmunol.abk1741
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Fixed single-cell transcriptomic characterization of human radial glial diversity.
Thomsen ER, Mich JK, Yao Z, Hodge RD, Doyle AM, Jang S, Shehata SI, Nelson AM, Shapovalova NV, Levi BP, Ramanathan S.
Nat Methods. 2015-11-16; 13 (1)
PMID: 26524239 DOI: 10.1038/nmeth.3629
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Recurrent read-through fusion transcripts in breast cancer.
Varley KE, Gertz J, Roberts BS, Davis NS, Bowling KM, Kirby MK, Nesmith AS, Oliver PG, Grizzle WE, Forero A, Buchsbaum DJ, LoBuglio AF, Myers RM.
Breast Cancer Res Treat. 2014-06-15; 146 (2)
PMID: 24929677 DOI: 10.1007/s10549-014-3019-2
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Memory CD4+ T cells are generated in the human fetal intestine.
Li N, van Unen V, Abdelaal T, Guo N, Kasatskaya SA, Ladell K, McLaren JE, Egorov ES, Izraelson M, Chuva de Sousa Lopes SM, Höllt T, Britanova OV, Eggermont J, de Miranda NFCC, Chudakov DM, Price DA, Lelieveldt BPF, Koning F.
Nat Immunol. 2019-01-21; 20 (3)
PMID: 30664737 DOI: 10.1038/s41590-018-0294-9
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Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19.
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